Racemomycin D (CED0033785)

Record Information

Version

1.0

Creation Date

2026-03-31 21:00:16 UTC

Update Date

2026-05-20 19:29:10 UTC

SynCED ID

CED0033785

Secondary Accession Numbers

CHEM057936

Identification

Common Name

Racemomycin D

Class

Small Molecule

Description

Racemomycin D is an organic compound with the chemical formula C37H70N14O11. Racemomycin D belongs to the carbohydrates and carbohydrate conjugates, a subclass of organooxygen compounds within the organic compounds. This substance is found in or released from one recorded source: healthcare, pharmaceuticals & veterinary products, specifically antibiotics. Recorded exposure routes for the compound include oral and inhalation.

Contaminant Type

Not Available

Chemical Structure

MOL SDF PDB SMILES InChI

Synonyms

Not Available

Chemical Formula

C₃₇H₇₀N₁₄O₁₁

Average Molecular Mass

Not Available

Monoisotopic Mass

886.535 g/mol

CAS Registry Number

Not Available

IUPAC Name

Not Available

Traditional Name

Not Available

SMILES

Not Available

InChI Identifier

InChI=1S/C37H70N14O11/c38-9-1-5-19(39)13-25(54)44-10-2-6-20(40)14-26(55)45-11-3-7-21(41)15-27(56)46-12-4-8-22(42)16-28(57)48-31-32(58)33(62-36(43)60)24(18-52)61-35(31)51-37-49-29-23(53)17-47-34(59)30(29)50-37/h19-24,29-33,35,52-53,58H,1-18,38-42H2,(H2,43,60)(H,44,54)(H,45,55)(H,46,56)(H,47,59)(H,48,57)(H2,49,50,51)/t19?,20?,21?,22?,23-,24-,29-,30+,31-,32+,33+,35-/m1/s1

InChI Key

UZMKRCMBWWXPBP-ITOBAMBSSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as glycosylamines. Glycosylamines are compounds consisting of an amine with a beta-N-glycosidic bond to a carbohydrate, thus forming a cyclic hemiaminal ether bond (alpha-amino ether).

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

Glycosylamines

Alternative Parents

Substituents

Hexose monosaccharide
Beta amino acid or derivatives
N-glycosyl compound
Alpha-amino acid or derivatives
Imidazopyridine
Delta-lactam
Piperidinone
Fatty amide
Fatty acyl
Monosaccharide
N-acyl-amine
Oxane
Piperidine
Carbamic acid ester
2-imidazoline
Amino acid or derivatives
Secondary carboxylic acid amide
Secondary alcohol
Carboxamide group
Lactam
Guanidine
Organic 1,3-dipolar compound
Propargyl-type 1,3-dipolar organic compound
Organoheterocyclic compound
Carboximidamide
Carboxylic acid derivative
Azacycle
Oxacycle
Primary amine
Alcohol
Hydrocarbon derivative
Primary aliphatic amine
Carbonyl group
Organic nitrogen compound
Amine
Organonitrogen compound
Organic oxide
Primary alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Biological Properties

Status

Detected and Not Quantified

Origin

Not Available

Cellular Locations

Not Available

Biofluid Locations

Not Available

Tissue Locations

Not Available

Applications

Not Available

Biological Roles

Not Available

Chemical Roles

Not Available

Organoleptic Effects

Not Available

Physical Properties

State

Not Available

Appearance

Not Available

Experimental Properties

Property	Value
Melting Point	Not Available
Boiling Point	Not Available
Solubility	Not Available

Predicted Properties

Not Available

Spectra

Not Available

Toxicity Profile

Toxicity Values

Not Available

Toxicity / Toxin Class

Not Available

Mechanism of Toxicity

Not Available

Carcinogenicity (IARC Classification)

Not Available

Minimum Risk Level

Not Available

Symptoms

Not Available

Treatment

Not Available

Health Effects

Health Effect	Relationship	Direction	Reference

Exposure Sources

Source ID	Source	Sector	Reference
CEDs000306	Antibiotics?Antibiotics are synthetic or semi-synthetic compounds used to treat bacterial infections in humans and animals.	Healthcare, pharmaceuticals & veterinary products	Not Available

Pathways

0 pathwaysPathway Source: PathBank

No pathways found

No metabolic pathways have been associated with this synthetic chemical

Targets

Structure	Protein	UniProt ID	Organism	Relationship	Details
Click to view 3D structure	Endo-beta-N-acetylglucosaminidase	Q9ZB22	Arthrobacter protophormiae	Predicted (SEA)	Prediction Confidence Score 0.191 Applicability Domain 0.191 Low confidence Statistical Significance 0.0022 Supporting Reference Compounds 1 E-value 16.8933
Click to view 3D structure	Spermine synthase	P52788	Humans	Predicted (SEA)	Prediction Confidence Score 0.167 Applicability Domain 0.168 Low confidence Statistical Significance 0.0102 Supporting Reference Compounds 2 E-value 79.7954
Click to view 3D structure	Mu-type opioid receptor	P97266	Cavia porcellus	Predicted (SEA)	Prediction Confidence Score 0.167 Applicability Domain 0.177 Low confidence Statistical Significance 0.6287 Supporting Reference Compounds 186 E-value 4894.07
Click to view 3D structure	Kappa-type opioid receptor	P41144	Cavia porcellus	Predicted (SEA)	Prediction Confidence Score 0.167 Applicability Domain 0.177 Low confidence Statistical Significance 0.69 Supporting Reference Compounds 199 E-value 5371.75
Click to view 3D structure	Mu-type opioid receptor	P33535	Rattus norvegicus	Predicted (SEA)	Prediction Confidence Score 0.167 Applicability Domain 0.177 Low confidence Statistical Significance 0.6817 Supporting Reference Compounds 229 E-value 5306.67
Click to view 3D structure	Kappa-type opioid receptor	P41145	Humans	Predicted (SEA)	Prediction Confidence Score 0.165 Applicability Domain 0.177 Low confidence Statistical Significance 0.9699 Supporting Reference Compounds 532 E-value 7550.28
Click to view 3D structure	Delta-type opioid receptor	P33533	Rattus norvegicus	Predicted (SEA)	Prediction Confidence Score 0.165 Applicability Domain 0.177 Low confidence Statistical Significance 0.6789 Supporting Reference Compounds 164 E-value 5285.34
Click to view 3D structure	Galectin-3	P17931	Humans	Predicted (SEA)	Prediction Confidence Score 0.164 Applicability Domain 0.183 Low confidence Statistical Significance 0.0948 Supporting Reference Compounds 23 E-value 738.088
Click to view 3D structure	Sialic acid-binding Ig-like lectin 7	Q9Y286	Humans	Predicted (SEA)	Prediction Confidence Score 0.164 Applicability Domain 0.164 Low confidence Statistical Significance 0.0011 Supporting Reference Compounds 1 E-value 8.56341
Click to view 3D structure	Adenosine receptor A3	O02667	Oryctolagus cuniculus	Predicted (SEA)	Prediction Confidence Score 0.163 Applicability Domain 0.167 Low confidence Statistical Significance 0.0353 Supporting Reference Compounds 2 E-value 274.73
Click to view 3D structure	Delta-type opioid receptor	P32300	Mus musculus	Predicted (SEA)	Prediction Confidence Score 0.162 Applicability Domain 0.177 Low confidence Statistical Significance 0.5964 Supporting Reference Compounds 166 E-value 4642.85
Click to view 3D structure	Adenosine receptor A1	P34970	Oryctolagus cuniculus	Predicted (SEA)	Prediction Confidence Score 0.162 Applicability Domain 0.167 Low confidence Statistical Significance 0.0405 Supporting Reference Compounds 3 E-value 315.601
Click to view 3D structure	Mu-type opioid receptor	P35372	Humans	Predicted (SEA)	Prediction Confidence Score 0.161 Applicability Domain 0.177 Low confidence Statistical Significance 0.9734 Supporting Reference Compounds 527 E-value 7578.08
Click to view 3D structure	Spermidine synthase	Q99MI5	Rattus norvegicus	Predicted (SEA)	Prediction Confidence Score 0.161 Applicability Domain 0.167 Low confidence Statistical Significance 0.0126 Supporting Reference Compounds 2 E-value 98.2457
Click to view 3D structure	Adenosine receptor A2a	P29274	Humans	Predicted (SEA)	Prediction Confidence Score 0.159 Applicability Domain 0.167 Low confidence Statistical Significance 0.9564 Supporting Reference Compounds 303 E-value 7445.66
Click to view 3D structure	Adenosine receptor A1	P30542	Humans	Predicted (SEA)	Prediction Confidence Score 0.159 Applicability Domain 0.167 Low confidence Statistical Significance 0.9502 Supporting Reference Compounds 302 E-value 7396.92
Click to view 3D structure	Delta-type opioid receptor	P41143	Humans	Predicted (SEA)	Prediction Confidence Score 0.158 Applicability Domain 0.167 Low confidence Statistical Significance 0.9639 Supporting Reference Compounds 427 E-value 7503.96
Click to view 3D structure	Adenosine receptor A1	P25099	Rattus norvegicus	Predicted (SEA)	Prediction Confidence Score 0.158 Applicability Domain 0.167 Low confidence Statistical Significance 0.8644 Supporting Reference Compounds 221 E-value 6729.36
Click to view 3D structure	Killer cell lectin-like receptor subfamily B member 1A	P27471	Rattus norvegicus	Predicted (SEA)	Prediction Confidence Score 0.157 Applicability Domain 0.159 Low confidence Statistical Significance 0.0074 Supporting Reference Compounds 2 E-value 57.842
Click to view 3D structure	Human immunodeficiency virus type 1 REV	Q77Y21	Human immunodeficiency virus 1	Predicted (SEA)	Prediction Confidence Score 0.155 Applicability Domain 0.176 Low confidence Statistical Significance 0.0012 Supporting Reference Compounds 4 E-value 9.6533
Click to view 3D structure	Adenosine receptor A2a	P30543	Rattus norvegicus	Predicted (SEA)	Prediction Confidence Score 0.155 Applicability Domain 0.157 Low confidence Statistical Significance 0.875 Supporting Reference Compounds 174 E-value 6811.73
Click to view 3D structure	Thymidine kinase 2	D3ZGQ2	Rattus norvegicus	Predicted (SEA)	Prediction Confidence Score 0.155 Applicability Domain 0.155 Low confidence Statistical Significance 0.1537 Supporting Reference Compounds 1 E-value 1196.23
Click to view 3D structure	Adenosine receptor A1	P28190	Bos taurus	Predicted (SEA)	Prediction Confidence Score 0.154 Applicability Domain 0.162 Low confidence Statistical Significance 0.6848 Supporting Reference Compounds 72 E-value 5331.35
Click to view 3D structure	Adenosine receptor A2b	P29275	Humans	Predicted (SEA)	Prediction Confidence Score 0.154 Applicability Domain 0.162 Low confidence Statistical Significance 0.9362 Supporting Reference Compounds 187 E-value 7288.56
Click to view 3D structure	Orotidine 5'-phosphate decarboxylase	O26232	Methanobacterium thermoautotrophicum	Predicted (SEA)	Prediction Confidence Score 0.154 Applicability Domain 0.186 Low confidence Statistical Significance 0.0066 Supporting Reference Compounds 3 E-value 51.1469